{
  "_id": "6a54abc4ff0138dec5d66786",
  "Package": "betaper",
  "Type": "Package",
  "Title": "Taxonomic Uncertainty on Multivariate Analyses of Ecological\nData",
  "Version": "1.1-3",
  "Authors@R": "c(person(\"Luis\", \"Cayuela\", role=c(\"aut\",\"cre\"),\nemail=\"luis.cayuela@urjc.es\"),\nperson(\"Marcelino\", \"de la Cruz\", role=\"aut\"))",
  "Date": "2025-06-17",
  "Author": "Luis Cayuela [aut, cre], Marcelino de la Cruz [aut]",
  "Maintainer": "Luis Cayuela <luis.cayuela@urjc.es>",
  "Description": "Permutational method to incorporate taxonomic uncertainty\nand some functions to assess its effects on parameters of some\nwidely used multivariate methods in ecology, as explained in\nCayuela et al. (2011) <doi:10.1111/j.1600-0587.2009.05899.x>.",
  "License": "GPL (>= 2)",
  "LazyLoad": "yes",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-13 09:07:37 UTC",
    "User": "root"
  },
  "Encoding": "UTF-8",
  "Repository": "https://luiscayuela.r-universe.dev",
  "Date/Publication": "2025-06-17 23:00:06 UTC",
  "RemoteUrl": "https://github.com/cran/betaper",
  "RemoteRef": "HEAD",
  "RemoteSha": "87d16f88e5aa6b2b23ea0a2c73c79848bef93785",
  "_user": "luiscayuela",
  "_type": "src",
  "_file": "betaper_1.1-3.tar.gz",
  "_fileid": "https://r2.ropensci.org/ba4196dc180ab3df7b2cb3c0adc96365ee130a169d686b374777421940ff2641",
  "_filesize": 165993,
  "_sha256": "ba4196dc180ab3df7b2cb3c0adc96365ee130a169d686b374777421940ff2641",
  "_expires": "2026-10-21T09:11:31.000Z",
  "_created": "2026-07-13T09:07:37.000Z",
  "_published": "2026-07-13T09:11:32.755Z",
  "_jobs": [
    {
      "job": 86776796147,
      "time": 128,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8274228528"
    },
    {
      "job": 86776796170,
      "time": 132,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8274230014"
    },
    {
      "job": 86776796091,
      "time": 183,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8274240363"
    },
    {
      "job": 86776796080,
      "time": 196,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8274236033"
    },
    {
      "job": 86776229698,
      "time": 168,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8274171730"
    },
    {
      "job": 86776796110,
      "time": 92,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8274212272"
    },
    {
      "job": 86776796117,
      "time": 109,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8274220740"
    },
    {
      "job": 86776796140,
      "time": 85,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8274209730"
    },
    {
      "job": 86776796061,
      "time": 83,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8274208642"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/luiscayuela/actions/runs/29237699154",
  "_status": "success",
  "_upstream": "https://github.com/cran/betaper",
  "_commit": {
    "id": "87d16f88e5aa6b2b23ea0a2c73c79848bef93785",
    "author": "Luis Cayuela <luis.cayuela@urjc.es>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.1-3\n",
    "time": 1750201206
  },
  "_maintainer": {
    "name": "Luis Cayuela",
    "email": "luis.cayuela@urjc.es",
    "login": "luiscayuela",
    "description": "",
    "uuid": 8425958
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "vegan",
      "role": "Depends"
    },
    {
      "package": "parallel",
      "role": "Depends"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "luiscayuela",
      "count": 3,
      "uuid": 8425958
    }
  ],
  "_userbio": {
    "uuid": 8425958,
    "type": "user",
    "name": "Luis Cayuela",
    "followers": 4
  },
  "_downloads": {
    "count": 284,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/betaper"
  },
  "_searchresults": 0,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/betaper.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "manual.pdf"
  ],
  "_realowner": "luiscayuela",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0-0",
      "date": "2008-06-09"
    },
    {
      "version": "1.1-0",
      "date": "2012-10-29"
    },
    {
      "version": "1.1-1",
      "date": "2020-03-02"
    },
    {
      "version": "1.1-2",
      "date": "2020-11-24"
    },
    {
      "version": "1.1-3",
      "date": "2025-06-17"
    }
  ],
  "_exports": [
    "adonis_pertables",
    "cca_pertables",
    "mantel_pertables",
    "pertables",
    "pertables.p2",
    "rda_pertables"
  ],
  "_datasets": [
    {
      "name": "Amazonia",
      "title": "Tree abundance and soil data in Western Amazonia",
      "object": "Amazonia",
      "file": "Amazonia.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Family",
        "Genus",
        "Specific",
        "Gengen",
        "Nauta",
        "Maniti",
        "Huanta",
        "Panguana",
        "Ex.Petroleros",
        "San.Antonio",
        "Santa.Ana",
        "Tarapoto"
      ],
      "rows": 1188,
      "table": true,
      "tojson": true
    },
    {
      "name": "HCP",
      "title": "Tree counts in tropical montane forest fragments",
      "object": "HCP",
      "file": "HCP.coords.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Family",
        "Genus",
        "Specific",
        "Carid",
        "Epalch",
        "Naven",
        "Huite",
        "Tzonte",
        "Santon",
        "Santia",
        "Mitziton",
        "Chilil",
        "Bazom",
        "Bvista",
        "Cholol",
        "Cruzton",
        "Yalcuk",
        "SJTunas",
        "Barreno"
      ],
      "rows": 231,
      "table": true,
      "tojson": true
    },
    {
      "name": "HCP.coords",
      "title": "Tree counts in tropical montane forest fragments",
      "object": "HCP.coords",
      "file": "HCP.coords.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "x",
        "y"
      ],
      "rows": 16,
      "table": true,
      "tojson": true
    },
    {
      "name": "soils",
      "title": "Tree abundance and soil data in Western Amazonia",
      "object": "soils",
      "file": "soils.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Ca",
        "K",
        "Mg",
        "Na"
      ],
      "rows": 9,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "adonis_pertables",
      "title": "Function to assess the efects of taxonomic uncertainty on permutational multivariate analysis of variance using distance matrices",
      "topics": [
        "adonis_pertables",
        "plot.adonis_pertables",
        "print.adonis_pertables"
      ]
    },
    {
      "page": "Amazonia",
      "title": "Tree abundance and soil data in Western Amazonia",
      "topics": [
        "Amazonia",
        "soils"
      ]
    },
    {
      "page": "cca_pertables",
      "title": "Function to assess the efects of taxonomic uncertainty on [Partial] Constrained Correspondence Analysis",
      "topics": [
        "cca_pertables",
        "plot.cca_pertables",
        "print.cca_pertables"
      ]
    },
    {
      "page": "HCP",
      "title": "Tree counts in tropical montane forest fragments",
      "topics": [
        "HCP",
        "HCP.coords"
      ]
    },
    {
      "page": "mantel_pertables",
      "title": "Function to assess the efects of taxonomic uncertainty on Mantel tests",
      "topics": [
        "mantel_pertables",
        "plot.mantel_pertables",
        "print.mantel_pertables"
      ]
    },
    {
      "page": "pertables",
      "title": "Function to incorporate the effect of taxonomic uncertainty on multivariate analyses of ecological data.",
      "topics": [
        "pertables",
        "pertables.p2",
        "print.pertables"
      ]
    },
    {
      "page": "rda_pertables",
      "title": "Function to assess the efects of taxonomic uncertainty on [Partial] Redundance Analysis",
      "topics": [
        "plot.rda_pertables",
        "print.rda_pertables",
        "rda_pertables"
      ]
    }
  ],
  "_rundeps": [
    "cluster",
    "lattice",
    "MASS",
    "Matrix",
    "mgcv",
    "nlme",
    "permute",
    "vegan"
  ],
  "_score": 1,
  "_indexed": true,
  "_nocasepkg": "betaper",
  "_universes": [
    "luiscayuela"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.1-3",
      "date": "2026-07-13T09:09:28.000Z",
      "distro": "resolute",
      "commit": "87d16f88e5aa6b2b23ea0a2c73c79848bef93785",
      "fileid": "https://r2.ropensci.org/b83a888a7edd8fe1b6422088bc37ed72b77e1f042234eb165292d209231118d5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/luiscayuela/actions/runs/29237699154"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.1-3",
      "date": "2026-07-13T09:09:31.000Z",
      "distro": "resolute",
      "commit": "87d16f88e5aa6b2b23ea0a2c73c79848bef93785",
      "fileid": "https://r2.ropensci.org/c08d60312de96bb917990de5fbf5241e785bde9d3b87c0e70dab7caf70e1da83",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/luiscayuela/actions/runs/29237699154"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.1-3",
      "date": "2026-07-13T09:10:04.000Z",
      "commit": "87d16f88e5aa6b2b23ea0a2c73c79848bef93785",
      "fileid": "https://r2.ropensci.org/0cd0537dcda67ed35fd67c9a47493011937614d4fbca7056265f32859f387cf8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/luiscayuela/actions/runs/29237699154"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.1-3",
      "date": "2026-07-13T09:09:45.000Z",
      "commit": "87d16f88e5aa6b2b23ea0a2c73c79848bef93785",
      "fileid": "https://r2.ropensci.org/4ef327c229da32ad9f17f90f53775df11c9ce8b6afd5267bd57949ec92410611",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/luiscayuela/actions/runs/29237699154"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.1-3",
      "date": "2026-07-13T09:09:26.000Z",
      "commit": "87d16f88e5aa6b2b23ea0a2c73c79848bef93785",
      "fileid": "https://r2.ropensci.org/dcd4be71c9fd0929b97ec5a628ab4618daf6b63eefd2e2a32c6168909855a6fa",
      "status": "success",
      "buildurl": "https://github.com/r-universe/luiscayuela/actions/runs/29237699154"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.1-3",
      "date": "2026-07-13T09:09:06.000Z",
      "commit": "87d16f88e5aa6b2b23ea0a2c73c79848bef93785",
      "fileid": "https://r2.ropensci.org/087e20efa02e2ae62f339819b1b2cc47af6c9cd8fe5b85fa1a9bc9d7e806d88b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/luiscayuela/actions/runs/29237699154"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.1-3",
      "date": "2026-07-13T09:08:43.000Z",
      "commit": "87d16f88e5aa6b2b23ea0a2c73c79848bef93785",
      "fileid": "https://r2.ropensci.org/0bd9639875af4bf59ef09deb55726bfac6ae2bccab5eea7afadb02fe5719b90b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/luiscayuela/actions/runs/29237699154"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.1-3",
      "date": "2026-07-13T09:08:40.000Z",
      "commit": "87d16f88e5aa6b2b23ea0a2c73c79848bef93785",
      "fileid": "https://r2.ropensci.org/ea6279ed129d3be4f1087d7ed3bdc37aa6d1dad8f5c61a9fad04150361e99327",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/luiscayuela/actions/runs/29237699154"
    }
  ]
}