Package: rareNMtests 1.2

rareNMtests: Ecological and Biogeographical Null Model Tests for Comparing Rarefaction Curves

Randomization tests for the statistical comparison of i = two or more individual-based, sample-based or coverage-based rarefaction curves. The ecological null hypothesis is that the i samples were all drawn randomly from a single assemblage, with (necessarily) a single underlying species abundance distribution. The biogeographic null hypothesis is that the i samples were all drawn from different assemblages that, nonetheless, share similar species richness and species abundance distributions. Functions are described in L. Cayuela, N.J. Gotelli & R.K. Colwell (2015) <doi:10.1890/14-1261.1>.

Authors:Luis Cayuela and Nicholas J. Gotelli

rareNMtests_1.2.tar.gz
rareNMtests_1.2.zip(r-4.7)rareNMtests_1.2.zip(r-4.6)rareNMtests_1.2.zip(r-4.5)
rareNMtests_1.2.tgz(r-4.6-any)rareNMtests_1.2.tgz(r-4.5-any)
rareNMtests_1.2.tar.gz(r-4.7-any)rareNMtests_1.2.tar.gz(r-4.6-any)
rareNMtests_1.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
rareNMtests/json (API)

# Install 'rareNMtests' in R:
install.packages('rareNMtests', repos = c('https://luiscayuela.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • Chiapas - Tree abundance in tropical montane forest plots

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.63 score 43 scripts 256 downloads 1 mentions 9 exports 8 dependencies

Last updated from:fd02db115c. Checks:7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64NOTE156
source / vignettesOK144
linux-release-x86_64NOTE112
macos-release-arm64NOTE96
macos-oldrel-arm64NOTE85
windows-develNOTE86
windows-releaseNOTE82
windows-oldrelNOTE97
wasm-releaseOK93

Exports:BiogTest.individualBiogTest.samplechao1EcoTest.individualEcoTest.sampleplot.BiogTestplot.EcoTestrarefaction.individualrarefaction.sample

Dependencies:clusterlatticeMASSMatrixmgcvnlmepermutevegan

Readme and manuals

Help Manual

Help pageTopics
Biogeographical null model testsBiogTest.individual BiogTest.sample plot.BiogTest
Computes the Chao 1 species richness estimatorchao1
Tree abundance in tropical montane forest plotsChiapas
Ecological null model testsEcoTest.individual EcoTest.sample plot.EcoTest
Rarefied species richness with Hill numbersrarefaction.individual rarefaction.sample